PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_07713.1_g00002.1
Common NameRsLFY2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LFY
Protein Properties Length: 272aa    MW: 30216.4 Da    PI: 4.7533
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_07713.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY303.75.1e-9312711265
                  FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdee 85 
                              mdpe f++ lf+w+p  a++++p+ + + ++++++p ++ ++aa  ++l +le lf  yGvr++t+akiaelGft+stLv+mkdee
  Rsa1.0_07713.1_g00002.1   1 MDPEGFTSGLFRWNPTRAIVQAPTPVPPPQQQQQQPpATPQTAAFGMRLGGLEGLFGPYGVRFYTAAKIAELGFTASTLVGMKDEE 86 
                              9*************776666666666555555444426666666777788************************************ PP

                  FLO_LFY  86 lddlmkslseifrldllvGeryGikaavraerrrlee..eeaekkrrkll.....sedeetaldalsqe....glseepvqeekea 160
                              l+d+m+sls+ifr++llvGeryGikaavraerrrl+e  ee++++rr+l+      + +++aldalsqe    glseepvq++ ++
  Rsa1.0_07713.1_g00002.1  87 LEDMMNSLSHIFRWELLVGERYGIKAAVRAERRRLQEeeEEESSRRRHLIlsaagDSGTHHALDALSQEdgwtGLSEEPVQHRDQT 172
                              ***********************************99544556788887778844344556*******988888******996665 PP

                  FLO_LFY 161 agsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelk.seededeeeeededeegsgedgeerqrehPfivtepgevargk 245
                               ++g +g g+ +   a +++     kk+   ++k+   ++++  ++ ++ ++++  d++++++ g+erqrehPfivtepgevargk
  Rsa1.0_07713.1_g00002.1 173 DAAGINGGGRGGYWEAGQTT----MKKQ---RRKKAIATSVEtDNDGNEGDDDDGMDNSNESALGTERQREHPFIVTEPGEVARGK 251
                              55544443444444444221....2222...22222222222023444555666677778888999******************** PP

                  FLO_LFY 246 knGLDYLfdLyeqCrefLlq 265
                              knGLDYLf+LyeqCrefLlq
  Rsa1.0_07713.1_g00002.1 252 KNGLDYLFHLYEQCREFLLQ 271
                              ******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.5E-1021271IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDPEGFTSGL FRWNPTRAIV QAPTPVPPPQ QQQQQPPATP QTAAFGMRLG GLEGLFGPYG  60
VRFYTAAKIA ELGFTASTLV GMKDEELEDM MNSLSHIFRW ELLVGERYGI KAAVRAERRR  120
LQEEEEEESS RRRHLILSAA GDSGTHHALD ALSQEDGWTG LSEEPVQHRD QTDAAGINGG  180
GRGGYWEAGQ TTMKKQRRKK AIATSVETDN DGNEGDDDDG MDNSNESALG TERQREHPFI  240
VTEPGEVARG KKNGLDYLFH LYEQCREFLL QP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ude_A2e-25491548110GINLFY PROTEIN
4ude_B2e-25491548110GINLFY PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4492490.0AB449249.1 Raphanus sativus RsLFY2 mRNA for leafy-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150114.11e-130PREDICTED: putative transcription factor BOFH isoform X1
SwissprotQ009581e-122LFY_ARATH; Protein LEAFY
TrEMBLB7XD701e-135B7XD70_RAPSA; Leafy-like protein
STRINGBra019619.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79072841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-107floral meristem identity control protein LEAFY (LFY)